OzWheat V1.0 SNP data assets

Created 21/09/2025

Updated 03/12/2025

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Single nucleotide polymorphism genotypes for ~300 varieties from the OzWheat diversity panel generated with alternative platforms combined in a single matrix. Original platform source files are also provided.

Transcript SNPs: 63,222 SNP loci. 298 wheat lines. File=OzWheat_Transsnp_filtered_CS1.0_231130.hmp.txt

90K Illumina SNP array: 23362 SNP loci. 286 wheat lines from OzWheat panel 1 and 300 lines from OzWheat panel 2. File=V1_V2_commonSNP_merged.hmp

40K Illumina SNP array: 10670 SNP loci. 286 wheat lines. File=OW1_40K_filtered.hmp.txt

DARTseq: 56467 SNP loci. 282 wheat lines. File=Report_DW21-6152_SNP_mapping_2.csv

Combined platform SNP - joins SNPs called from transcriptome data, 90K and 40K array and DARTseq. 115,260 SNP loci. 296 wheat lines. File=OzWheat_Transsnp40k90kDArT_filtered_CS1.0_alleleinfo_240102.hmp.txt

Keeble-Gagnère G, Pasam R, Forrest KL, et al. Novel Design of Imputation-Enabled SNP Arrays for Breeding and Research Applications Supporting Multi-Species Hybridization. Front Plant Sci. 2021;12:756877. Published 2021 Dec 22. doi:10.3389/fpls.2021.756877

Files and APIs

This dataset has no data

Additional Info

Field	Value
Title	OzWheat V1.0 SNP data assets
Language	English
Licence	Not Specified
Landing Page	https://data.gov.au/data/dataset/d7b343a3-c858-517e-a5b8-2681d4453299
Contact Point	CSIRO Data Access Portal CSIROEnquiries@csiro.au
Reference Period	01/01/2000
Geospatial Coverage	Australia
Data Portal	CSIRO DAP

Data Source

This dataset was originally found on CSIRO DAP "OzWheat V1.0 SNP data assets". Please visit the source to access the original metadata of the dataset:
https://data.csiro.au/collection/csiro:54994